Publications

2024

1. 

   Rapid 3D imaging at cellular resolution for digital cytopathology with a multi-camera array scanner (MCAS)

   Kanghyun Kim , Amey Chaware , Clare B Cook , Shiqi Xu, Monica Abdelmalak , Colin Cooke , Kevin C Zhou , Mark Harfouche , and 3 more authors

   npj Imaging, 2024

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2. 

   Self-supervised deep image restoration for x-ray computed laminographic tomography

   Shiqi Xu, Susan Candell , Tom Case , Aksel Goehnermeier , Jeffrey Irwin , Kamyar Majlan , Moshe Preil , Johannes Ruoff , and 3 more authors

   In Developments in X-Ray Tomography XV , 2024

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3. 

   X-ray reconstruction using synthetic prior image restoration, with application to noise and artefact removal

   Matthew Andrew , Andriy Andreyev , Faguo Yang , Moran Xu , and Shiqi Xu

   In Developments in X-Ray Tomography XV , 2024

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4. 

   Anisotropic regularization for sparsely sampled and noise-robust Fourier ptychography

   Kyung Chul Lee , Hyesuk Chae , Shiqi Xu, Kyungwon Lee , Roarke Horstmeyer , Seung Ah Lee , and Byung-Woo Hong

   Optics Express, 2024

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5. 

   Tensorial tomographic Fourier Ptychography with applications to muscle tissue imaging

   Shiqi Xu, Xi Yang , Paul Ritter , Xiang Dai , Kyung Chul Lee , Lucas Kreiss , Kevin C Zhou , Kanghyun Kim , and 3 more authors

   Advanced Photonics, 2024

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6. 

   Digital staining in optical microscopy using deep learning - a review

   Lucas Kreiss , Shaowei Jiang , Xiang Li , Shiqi Xu, Kevin C Zhou , Alexander Mühlberg , Kyung Chul Lee , Kanghyun Kim , and 3 more authors

   PhotoniX, 2024

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2023

1. 

   Imaging across multiple spatial scales with the multi-camera array microscope

   Mark Harfouche , Kanghyun Kim , Kevin C Zhou , Pavan Chandra Konda , Sunanda Sharma , Eric E Thomson , Colin Cooke , Shiqi Xu, and 3 more authors

   Optica, 2023

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2. 

   Multi-modal imaging using a cascaded microscope design

   Xi Yang , Mark Harfouche , Kevin C Zhou , Lucas Kreiss , Shiqi Xu, Pavan Chandra Konda , Kanghyun Kim , and Roarke Horstmeyer

   Optics Letters, 2023

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2022

1. 

   Gigapixel imaging with a novel multi-camera array microscope

   Eric E Thomson , Mark Harfouche , Kanghyun Kim , Pavan C Konda , Catherine W Seitz , Colin Cooke , Shiqi Xu, Whitney S Jacobs , and 3 more authors

   Elife, 2022

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2. 

   Optical imaging and spectroscopy for the study of the human brain: status report

   Hasan Ayaz , Wesley B Baker , Giles Blaney , David A Boas , Heather Bortfeld , Kenneth Brady , Joshua Brake , Sabrina Brigadoi , and 3 more authors

   Neurophotonics, 2022

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3. 

   A multiple instance learning approach for detecting COVID-19 in peripheral blood smears

   Colin L Cooke , Kanghyun Kim , Shiqi Xu, Amey Chaware , Xing Yao , Xi Yang , Jadee Neff , Patricia Pittman , and 3 more authors

   PLOS Digital Health, 2022

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4. 

   Tensorial tomographic differential phase-contrast microscopy

   Shiqi Xu, Xiang Dai , Xi Yang , Kevin C Zhou , Kanghyun Kim , Vinayak Pathak , Carolyn Glass , and Roarke Horstmeyer

   In 2022 IEEE International Conference on Computational Photography (ICCP) , 2022

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5. 

   Transient motion classification through turbid volumes via parallelized single-photon detection and deep contrastive embedding

   Shiqi Xu, Wenhui Liu , Xi Yang , Joakim Jönsson , Ruobing Qian , Paul McKee , Kanghyun Kim , Pavan Chandra Konda , and 3 more authors

   Frontiers in neuroscience, 2022

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6. 

   Imaging Dynamics Beneath Turbid Media via Parallelized Single-Photon Detection

   Shiqi Xu, Xi Yang , Wenhui Liu , Joakim Jönsson , Ruobing Qian , Pavan Chandra Konda , Kevin C Zhou , Lucas Kreiß , and 3 more authors

   Advanced Science, 2022

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7. 

   Quantitative Jones matrix imaging using vectorial Fourier ptychography

   Shiqi Xu, Xiang Dai , Xi Yang , Kevin C Zhou , Carolyn Glass , Pavan Chandra Konda , and Roarke Horstmeyer

   Biomedical optics express, 2022

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8. 

   Increasing a microscope’s effective field of view via overlapped imaging and machine learning

   Xing Yao , Vinayak Pathak , Haoran Xi , Amey Chaware , Colin Cooke , Kanghyun Kim , Shiqi Xu, Yuting Li , and 3 more authors

   Optics Express, 2022

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2021

1. 

   Quantized Fourier ptychography with binary images from SPAD cameras

   Xi Yang , Pavan Chandra Konda , Shiqi Xu, Liheng Bian , and Roarke Horstmeyer

   Photonics Research, 2021

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2. 

   Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection

   Wenhui Liu , Ruobing Qian , Shiqi Xu, Pavan Chandra Konda , Joakim Jönsson , Mark Harfouche , Dawid Borycki , Colin Cooke , and 3 more authors

   APL Photonics, 2021

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2020

1. 

   Fourier ptychography: current applications and future promises

   Pavan Chandra Konda , Lars Loetgering , Kevin C Zhou , Shiqi Xu, Andrew R Harvey , and Roarke Horstmeyer

   Optics express, 2020

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2. 

   Real-time colorectal cancer diagnosis using PR-OCT with deep learning

   Shiqi Xu, Yifeng Zeng , William C Chapman Jr , Shuying Li , Zahra Alipour , Heba Abdelal , Deyali Chatterjee , Matthew Mutch , and 1 more author

   Theranostics, 2020

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2019

1. 

   Improving DOT reconstruction with a Born iterative method and US-guided sparse regularization

   Shiqi Xu, KM Shihab Uddin , and Quing Zhu

   Biomedical optics express, 2019

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2. 

   Regularized fourier ptychography using an online plug-and-play algorithm

   Yu Sun , Shiqi Xu, Yunzhe Li , Lei Tian , Brendt Wohlberg , and Ulugbek S Kamilov

   In ICASSP 2019-2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) , 2019

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